Running a 15N-HSQC
Pulse programs available
In the Bruker pulse program catalogue, there are several pulse programs available. These include:
the standard echo / anti-echo versions with sensitivity improvement:
hsqcetfpf3gpsi
hsqcetfpf3gpsi2
along with their TROSY versions:
trosyetf3gpsi
trosyetf3gpsi2
trosyetfpf3gpsi
SO-FAST HMQC:
sfhmqcf3gpph
sfhmqcf3gpphiasi
BEST version with TROSY options:
b_hsqcetf3gpsi
b_trosyetf3gpsi
b_trosyetf3gpsi.2
b_trosyetf3gpsi.3
Pulse sequences already tested and standard parameters implements on our systems are in bold.
Standard parameters
Standard 15N-HSQC
For the standard 15N-HSQC (hsqcetfpf3gpsi
): PROT_N-HSQC
For the TROSY version of the 15N-HSQC (trosyetfpf3gpsi
): TROSYETF3GPSI
(from the Bruker library)
For the SO-FAST 15N-HMQC (sfhmqcf3gpph
): PROT_SFHMQC
BEST versions
if you want to investigate downfield shifted signals (such as tryptophan side chain resonances) or signals which are very close to the water frequency, the bandwidth and/or offset frequency may need to be fine tuned. The offset is simply changed by altering the parameter cnst19 (or cnst54), but changing the bandwidth requires all shape lengths and amplitudes to be recalculated. The python script “bestbw” provides an easy-to-use solution for changing both these parameters
The Python program bestbw
lengths and amplitudes can be used to change the excitation bandwidth and recalculate the shape lengths and amplitudes of the pulses.
For the BEST version of the 15N-HSQC (b_hsqcetf3gpsi
): B_HSQCETF3GPSI
(from the Bruker library)
For the BEST version with TROSY of the 15N-HSQC (b_trosyetf3gpsi
): B_TROSYETF3GPSI
(from the Bruker library)